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rs257273100 SNP Detail
Summary
  • ID
    rs257273100
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr15:101169291 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAGTGGTGCT CAGAAACAGA
AAACCTAGTG GGCAGCCTCT GGTTCTCCAC AGAACTTGTG TTTCTGGCAC TGGATGAAAG
GACACAGGCA GAGGGTTTGG TTCTTGCTGG GGGTGGACTT GGGAACAGGC TGTGTGTTTG
TCCCAGTGCT GGGTGCCTGC TTGGCTTCCC CCACCTCCAC CCCCTTAGTC CTCTCCTCTG
Y
GCCAGGAAAA GGGCAGGTGG ACACATGCAG ACACCTGTTA GAACAGGTGT CTGGACGGCC
GTGGGAGTTC CTAGACCCTG GTCTTGGGTT CTGGGATCTT CCCTGTGAGG TTGAAACCTT
CTCCAGTATC TCCCAGACTC CTCTCTGCGC TCTGGCCCTC CGTTTCTCCC TCCCCTACAT
CCAAATGTTA GGAAAATAGC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss395193003 MGP_WTSI_15_101101841 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257273100 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss395193003 MGP_WTSI_15_101101841 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:101169291 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Nr4a1 nuclear receptor subfamily 4, group A, member 1 within coordinates
Tssr133222 transcription start site region 133222 1994 bp downstream
Tssr133223 transcription start site region 133223 1304 bp downstream
Tssr133224 transcription start site region 133224 1286 bp downstream
Tssr133225 transcription start site region 133225 1270 bp downstream
Tssr133226 transcription start site region 133226 1252 bp downstream
Tssr133227 transcription start site region 133227 1239 bp downstream
Tssr133228 transcription start site region 133228 1223 bp downstream
Tssr133229 transcription start site region 133229 1185 bp downstream
Tssr133230 transcription start site region 133230 1126 bp downstream
Tssr133231 transcription start site region 133231 1100 bp downstream
Tssr133232 transcription start site region 133232 1073 bp downstream
Tssr133233 transcription start site region 133233 1052 bp downstream
Tssr133234 transcription start site region 133234 1026 bp downstream
Tssr133235 transcription start site region 133235 984 bp downstream
Tssr133236 transcription start site region 133236 945 bp downstream
Tssr133237 transcription start site region 133237 914 bp downstream
Tssr133238 transcription start site region 133238 896 bp downstream
Tssr133239 transcription start site region 133239 833 bp downstream
Tssr133240 transcription start site region 133240 765 bp downstream
Tssr133241 transcription start site region 133241 756 bp downstream
Tssr133242 transcription start site region 133242 744 bp downstream
Tssr133243 transcription start site region 133243 723 bp downstream
Tssr133244 transcription start site region 133244 693 bp downstream
Tssr133245 transcription start site region 133245 647 bp downstream
Tssr133246 transcription start site region 133246 617 bp downstream
Tssr133247 transcription start site region 133247 536 bp downstream
Tssr133248 transcription start site region 133248 518 bp downstream
Tssr133249 transcription start site region 133249 324 bp upstream
Tssr133250 transcription start site region 133250 358 bp upstream
Tssr133251 transcription start site region 133251 389 bp upstream
Tssr133252 transcription start site region 133252 736 bp upstream
Tssr133253 transcription start site region 133253 747 bp upstream
Tssr133254 transcription start site region 133254 767 bp upstream
Tssr133255 transcription start site region 133255 800 bp upstream
Tssr133256 transcription start site region 133256 841 bp upstream
Tssr133257 transcription start site region 133257 859 bp upstream
Tssr133258 transcription start site region 133258 1311 bp upstream
Tssr133259 transcription start site region 133259 1328 bp upstream
Tssr133260 transcription start site region 133260 1346 bp upstream
Tssr133261 transcription start site region 133261 1356 bp upstream
Tssr133262 transcription start site region 133262 1367 bp upstream
Tssr133263 transcription start site region 133263 1388 bp upstream
Tssr133264 transcription start site region 133264 1407 bp upstream
Tssr133265 transcription start site region 133265 1616 bp upstream
Tssr133266 transcription start site region 133266 1641 bp upstream
Tssr133267 transcription start site region 133267 1682 bp upstream
Tssr133268 transcription start site region 133268 1729 bp upstream
Tssr133269 transcription start site region 133269 1901 bp upstream
Tssr136545 transcription start site region 136545 1100 bp upstream
Tssr136546 transcription start site region 136546 979 bp upstream
Tssr136547 transcription start site region 136547 904 bp upstream
Tssr136548 transcription start site region 136548 887 bp upstream
Tssr136549 transcription start site region 136549 862 bp upstream
Tssr136550 transcription start site region 136550 746 bp upstream
Tssr136551 transcription start site region 136551 641 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory