rs257274263 SNP Detail

Summary

• ID
  rs257274263
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95741711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTGGAAT GAAGGTGCTA
  CTAAAGGAGG AGGGTAAATA GAGTAGTTAC CTCATAACAT GACAATTCTT TATAATATAT
  ACCCAAAAGA ATTTATAACA GGGATTTGAA CATATATGTT TACACTTTTG CTCATCAAAG
  CATTGATATT CACAATAGCT CAGTGGTGGA AGCAAATGCT CAACAGATGA GTAAATATAA
  C
  CCTCCCAAAC GTGGCATAAA CATGGTATTA TTCAGTATGA TGAGGAAAGA CATTCTAATA
  TGCTACAACA AAGCTAGTGA GTTTCAACCT GTAGGTAAAC CCCTCTTTCC AAAAATATAT
  ACATTATGAT TCATAACTAG CAAAATTATA ATGATGAAGT AGTAATGAGA ATAATTTTAT
  AGTTGAGTCA CCAAGAATTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323104530	CHEV_9_95760077	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257274263					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95741711 () rs orientation: forward

Symbol	Name	Function Class
1700065D16Rik	RIKEN cDNA 1700065D16 gene	1776 bp upstream
Atr	ataxia telangiectasia and Rad3 related	within coordinates
Cpgi22158	CpG island 22158	1154 bp distal
Rr198099	regulatory region 198099	290 bp proximal
Rr206894	regulatory region 206894	910 bp distal
Rr368834	regulatory region 368834	1947 bp downstream
Rr401608	regulatory region 401608	835 bp downstream
Tssr86577	transcription start site region 86577	1972 bp downstream
Tssr86578	transcription start site region 86578	1948 bp downstream
Tssr86579	transcription start site region 86579	1707 bp downstream
Tssr90941	transcription start site region 90941	1782 bp upstream
Tssr90942	transcription start site region 90942	1763 bp upstream