rs257278632 SNP Detail

Summary

• ID
  rs257278632
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59838038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTCCCTTC TTCCTCAGGA ATCATGGCCC
  TTCCCCTAAG GTGGAGAGGT CCTGGGTTAG AAGGAAATCC TACAGTTTCC TGCAGTGAGA
  AATGTTCTTC TAATCAGACA CTTAGTTCCA CAGGGGCCTG TATTCCCTAA CTCCACTCCC
  M
  CCACCCACCT TTCCCTTTGG GTGATTAGCC CATTGAGTCA TATTGAGAAG TTGTGTTCCC
  ACTAATGGGA TGAAATGCAC CTAAGCCTGA GATGGAAGAA AGTGGCCATT TTGTTGAGTG
  TTTCTGCTAT CTTATCTTGA GTTCTGGTGC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323699683	CHEV_11_59760714	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257278632					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59838038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2971	CpG island 2971	629 bp proximal
Med9	mediator complex subunit 9	994 bp upstream
Med9os	mediator complex subunit 9, opposite strand	within coordinates
Rr448290	regulatory region 448290	518 bp proximal
Rr448291	regulatory region 448291	923 bp proximal
Tssr101871	transcription start site region 101871	997 bp upstream
Tssr108257	transcription start site region 108257	867 bp downstream
Tssr108258	transcription start site region 108258	895 bp downstream
Tssr108259	transcription start site region 108259	963 bp downstream