rs257289139 SNP Detail

Summary

• ID
  rs257289139
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38306231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTGATTC CCAGCAACCA
  CATGGTGGCT CACAACCATC CGTAACAAGA TCTGGCCCCC TCTTCTGGAG TGTCTGAAGA
  CAGCTACAGT GCACTTACAT ATAATAAATA AATAAATCTT TAAAAAAAAA AAAAGAATTA
  ACTTCCTAAG CTTACACTGT AGGATGAATG GGTCTTCACT GACCGATCTC TCTCTCTTTT
  W
  AAAAAAAAAA AAAAAAAGGC CCTAAGCCAG AACACTGACT TCAGCCATTC AAGTACAAGG
  AGGAAAATCA CCAGGGAAAA GAACAAACAT CAAAGTTGAT TCGGTTTCGT TTGAACTCGT
  GCTTACAAGA GAGCACGTCC TGATAACGTA TCTTTCCTGA TGTTTTTTCA ATCACTATGT
  TTTCTTCAAG CTGTTGGCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	DBA/1J	DBA/2J	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	ZALENDE/EiJ
ss388310615	MGP_WTSI_13_38214124	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	DBA/1J	DBA/2J	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	ZALENDE/EiJ
rs257289139					SNP	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388310615	MGP_WTSI_13_38214124	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38306231 () rs orientation: forward

Symbol	Name	Function Class
Rr271625	regulatory region 271625	31 bp distal
Rr275880	regulatory region 275880	970 bp proximal
Rr275881	regulatory region 275881	1569 bp proximal
Rr279089	regulatory region 279089	719 bp distal
Rr279090	regulatory region 279090	229 bp distal
Rr279091	regulatory region 279091	152 bp proximal
Rr388287	regulatory region 388287	908 bp upstream