rs257291556 SNP Detail

Summary

• ID
  rs257291556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72195143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCGTGCA CTCATTCCTT
  TTAAAACAGA ATATGCTTCC CTGGGCTCCC TGTATGATTA CATTAACAGC AACAGGAGTG
  AAGAGATGGA CATGGAACAC ATCATGACCT GGGCCACTGA CGTAGCCAAA GGTAACGCTG
  CTTGCTGTGA GCCCTCAGAG GTGGGCAGTG TCTTCCCACT CTGACCTGAG AGACTCTCTC
  R
  GAAGTCTTCT ATTCTGTGTC TGCAGACATT CTTTTTGCAG ATCAAATTTA GTAAAAATAT
  TTCAACTCAC TGTACAAATA TTTTAGGTTA TTGCCTTCCC ATTACTAAGT TCCCTTTGTC
  TTTCTCTGTT TTCTTAATCA ACCCCCAAAA TCAAGTTTTA CAAAGTCAGA AAGTTTCAGG
  CCAGAGATTT TTTTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342075	CHEV_2_72202856	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257291556					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72195143 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			1050 bp proximal
Rr558962	regulatory region 558962			1731 bp proximal
Tssr18337	transcription start site region 18337			213 bp upstream