rs257297467 SNP Detail

Summary

• ID
  rs257297467
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:122880060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cgccctgcg catattggca cagccttttc
  agattacggt agatgctctt ctctgccatt tgactctcac tcagtgagtg atggcttctt
  taggatagtA CAGGAGGAGA AGCCAAGTCT TACTATGTAG CTAGACCTGT TCTTAAACTT
  K
  CTCTTTGGCC CTTCTGGGTA GCCACCTGCC CTGGATAAAC TCTAGGTTTG GGAAGGGCAC
  AAATGCTAGC ACAGTTCTCT CCTGTGTCAG ATGTGTGCTG CGAACGGCGG AGTGCTGATG
  GGGAACTGGA CAGGAGACTA TGCCGATGGC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323233189	CHEV_9_122960113	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257297467					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:122880060 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tgm4	transglutaminase 4 (prostate)			Intron
				Noncoding-Transcript-Variant
Tssr87883	transcription start site region 87883			1570 bp downstream
Tssr87884	transcription start site region 87884			189 bp upstream
Tssr87885	transcription start site region 87885			331 bp upstream
Tssr87886	transcription start site region 87886			1740 bp upstream
Tssr92118	transcription start site region 92118			428 bp downstream