rs257312254 SNP Detail

Summary

• ID
  rs257312254
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40366041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGAGTCCA GAAGTAAATT
  GAAGAGGGGA CATGGTATCC ATGAGTAGCG GGGACTCCAT GCCACCATGG GCAACTTCCT
  GAAGCAACAC ACACACACAT TACCCTGTGA GCTTCATGCT AGTTCTTGAA TGTGAACAGC
  AAACATCTCC CTAGCAAAAC TGAAGCTGGC ACGGTGATCG ATCGTGAGAT GTGTCCGTGA
  W
  GTGGTAGAAA ATGTGAATAC GTCACCTCTC CATAGGCAAC ATGGACCTGT ACCAGCAGGG
  TAGTGTAGGA AAAAGAAAAT GACAAAAAGT GAAATGGGAT TCGGAAGTCC ATGTGGAGGC
  GTCACTTAAA CTTCTGTCAC TAGTCTCCCG ACACCTCCAC CTGTACAATG GAATCATAGC
  CTAATACTAT CTACCTAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377313574	MGP_WTSI_9_40262330	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257312254					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377313574	MGP_WTSI_9_40262330	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40366041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	407 bp proximal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	659 bp proximal
Rr676840	regulatory region 676840	915 bp proximal
Rr676841	regulatory region 676841	1090 bp proximal
Tssr84449	transcription start site region 84449	548 bp upstream
Tssr84450	transcription start site region 84450	1146 bp upstream
Tssr88934	transcription start site region 88934	597 bp downstream
Tssr88935	transcription start site region 88935	673 bp downstream
Tssr88936	transcription start site region 88936	698 bp downstream
Tssr88937	transcription start site region 88937	761 bp downstream
Tssr88938	transcription start site region 88938	1029 bp downstream
Tssr88939	transcription start site region 88939	1036 bp downstream
Tssr88940	transcription start site region 88940	1092 bp downstream
Tssr88941	transcription start site region 88941	1374 bp downstream
Tssr88942	transcription start site region 88942	1392 bp downstream
Tssr88943	transcription start site region 88943	1407 bp downstream
Tssr88944	transcription start site region 88944	1450 bp downstream
Tssr88945	transcription start site region 88945	1485 bp downstream
Tssr88946	transcription start site region 88946	1567 bp downstream
Tssr88947	transcription start site region 88947	1595 bp downstream
Tssr88948	transcription start site region 88948	1642 bp downstream