rs257320275 SNP Detail

Summary

• ID
  rs257320275
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114961168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAC TCTGCCAAAA AAAAAAAAAA
  W
  AAATAAACCC TACTGTACAT GGGCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321653559	CHEV_5_115273116	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257320275					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114961168 () rs orientation: forward

Symbol	Name	Function Class
2610524H06Rik	RIKEN cDNA 2610524H06 gene	within coordinates
Cpgi16338	CpG island 16338	136 bp proximal
Gm46920	predicted gene, 46920	623 bp upstream
Gm57857	predicted gene, 57857	within coordinates
Gm72061	predicted gene, 72061	423 bp upstream
Gm72071	predicted gene, 72071	651 bp downstream
Gm72099	predicted gene, 72099	within coordinates
Rr108236	regulatory region 108236	1433 bp proximal
Rr124118	regulatory region 124118	within coordinates
Rr378493	regulatory region 378493	within coordinates
Tssr52734	transcription start site region 52734	333 bp downstream
Tssr52735	transcription start site region 52735	354 bp downstream
Tssr52736	transcription start site region 52736	371 bp downstream