rs257325601 SNP Detail

Summary

• ID
  rs257325601
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84504397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCAGAGT ACCCTTAAAG
  TGGAAGACTT AAAGGTCTCC AAGGTCTCCA GTTATAGCTC AGTGGTAAGA TGCTTAGCTA
  GCAAGCATGA ACCACGGGGT CCCCAGCTCC ACACAAGACA AAACAGCCAT GTTAACATGT
  GATTGATGCT CAGATAGCTG GTGTGATATT AGCAGGGCAG CTGATGTCCT TTGGGCCCTG
  A
  CGATGGTTTC TGCTGGTTCT CTCCAGCTTT ACTCTATAAT GGCTTTACTC TCTGGATGGA
  GACCTAAGTA CAGAATCCTC TAGATGGGTT GATTTCTCAT CTGGAATGAC AGCAGGTCTA
  TTACTAGGGT TCCACACTAC AAGGTTCTAC CTCACTAATT CAAGAACAGG TCTATCACTT
  AAATCCCCTT GATGTGTTCC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261408	CHEV_16_84707754	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257325601					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84504397 () rs orientation: forward

Symbol	Name	Function Class
Gm60965	predicted gene, 60965	within coordinates
Mir155hgit	Mir155 host gene intronic transcript	within coordinates
Rr329073	regulatory region 329073	1892 bp proximal
Rr404940	regulatory region 404940	997 bp upstream
Tssr139159	transcription start site region 139159	1929 bp downstream
Tssr139160	transcription start site region 139160	1861 bp downstream
Tssr139161	transcription start site region 139161	1624 bp downstream
Tssr139162	transcription start site region 139162	1365 bp upstream
Tssr139163	transcription start site region 139163	1541 bp upstream
Tssr139164	transcription start site region 139164	1811 bp upstream
Tssr139165	transcription start site region 139165	1840 bp upstream
Tssr139166	transcription start site region 139166	1873 bp upstream