rs257327005 SNP Detail

Summary

• ID
  rs257327005
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:56584639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGTTCT AGAAAGTCAT
  CACATTTTCA CATCAGCAAA ATCCCTTGAC TAAAACATAG CCAGAGTATT AGGCAAAGCA
  ACCTCAGAAT AGGAACTAAA AGAATCTATC AATTTTGTGA CTTCAAAAAC AATATGGAGA
  AATTTATTGG TAAATACAAC TTTTCAAATC AATTCTATTC CTATAATATT TTGTTTAATT
  R
  TATCTATAAT ATTAATAAAA ATCTAATATT TATAATTTAA TATAATAGAT ATTGCTATAA
  TTTAAAACTA CTATCATTAT CCTGATATTA TTATGAATAT TATTATATTT ATCAATTTCA
  ATCTCACCAA ATGCTTAGTT TGCTCTGCAT ATTTTACCTC AATTTGTTTT GTCAACAATT
  GCTTCTTTCC TTAATCAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss374768462	MGP_WTSI_8_58610401	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs257327005					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374768462	MGP_WTSI_8_58610401	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:56584639 () rs orientation: forward

Symbol	Name	Function Class
9330109K16Rik	RIKEN cDNA 9330109K16 gene	1538 bp downstream
Glra3	glycine receptor, alpha 3 subunit	1534 bp downstream