rs257329069 SNP Detail

Summary

• ID
  rs257329069
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119573111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCAGCC CCGGGCTGGA
  GAGGGCTCCG CGCCGGAGCG TCGGGGAGCT GCGCCTGCTC TTCGAAGCGC GCTGCGCCGC
  AGTCGCCGCT GCAGCAGCCG CAGGGGAGCC CCGGGCCCGC GGGGCCAAGC GGCGTGGGGG
  ACAAGTGCCC AACGGGCTCC CGCGTGCTGC CCCTGCCCCG GTGATCCCTC AGCTCACTGT
  R
  ACAAGCGAGG AGGATGTGAC CCCGGCCAGC CCAGGGCCGC CAGACCAGGA GGGGAACTGG
  CTCCCAGCTG CGGGGTCGCA CCTGCAGCAG CCACGCCGCC TCTCCACCTC GTCCCTCTCC
  TCCACCGGCT CCTCGTCGCT GCTCGAGGAC TCGGAGGACG ATCTGCTGAG CGACAGTGAG
  AGCAGGAGCC GCGGCAACGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355435763	MGP_WTSI_2_119568366	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257329069					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355435763	MGP_WTSI_2_119568366	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119573111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12126	CpG island 12126	within coordinates
Gm25857	predicted gene, 25857	1674 bp upstream
Gm75736	predicted gene, 75736	within coordinates
Itpka	inositol 1,4,5-trisphosphate 3-kinase A	Coding-Synonymous
Rr563568	regulatory region 563568	283 bp distal
Rr563569	regulatory region 563569	561 bp distal
Rr563570	regulatory region 563570	519 bp distal
Rr563571	regulatory region 563571	555 bp proximal
Rr563572	regulatory region 563572	587 bp proximal
Rr563573	regulatory region 563573	1888 bp proximal
Tssr19656	transcription start site region 19656	325 bp downstream
Tssr19657	transcription start site region 19657	299 bp downstream
Tssr19658	transcription start site region 19658	275 bp downstream
Tssr25827	transcription start site region 25827	530 bp downstream