rs257330827 SNP Detail

Summary

• ID
  rs257330827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70418249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGAGACTC TGTGCTTCCA CGCCTGTGAA CTTCAGCCCT
  CGTTCCCAAG CTGTGCCAAG GGTCCTCACG TTCAGCTACT AACTCCAAAC CCACTGTCCT
  Y
  GTTTTATCTA CAGCTCTCGC TTTGGCCATG GAACGCGACG GCTCCAGTGG AGGGGTGATC
  CGCTTGGCAG CCATTCAGGA GTCAGGGGTA GAGCGGCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323735976	CHEV_11_70340925	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257330827					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70418249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	1881 bp distal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Tssr102729	transcription start site region 102729	1492 bp downstream
Tssr102730	transcription start site region 102730	1448 bp downstream
Tssr102731	transcription start site region 102731	1389 bp downstream
Tssr102732	transcription start site region 102732	1491 bp upstream