rs257334402 SNP Detail

Summary

• ID
  rs257334402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49025359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTGGCT TTGAACTTGA
  TTTGTAAGCT AGGGTAGCCT CAAACTTGTA TTGATTTCTC CGCTGCTGTT AGGTTTGCAT
  TGCCCAAATT TATTCCTTTA TAGAATGTTT TAAATTGTAA AATAGTTAAT CCACATTTCT
  TACTAAAAGT TGGAACTAAC CAGGGAGAAG CCTAGCATAG AAGGAAAAGT CCCCATGTTC
  Y
  CTCTTCCCCA GTTCATCCTG GCGTTGCTGG CCACGTCTCT GCGCAGATCA TTCTCTATGC
  ACCTGGCGTT GCTGGCCACG TTTCTGCGCA GATCATTCTC TATGCATTTA CAAACATCCT
  ATGTGGTCTG TCATTTTGGA TGTTATGTAA ATGGGTTCAC ATCATGTGCT GTGTTCTTTG
  CCCCTCTTTG CTAAATAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368235235	MGP_WTSI_6_48998424	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T	T	T	C	T	T	C	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257334402					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T	T	T	C	T	T	C	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368235235	MGP_WTSI_6_48998424	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49025359 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	1975 bp distal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	1987 bp distal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56340	transcription start site region 56340	1964 bp downstream
Tssr56341	transcription start site region 56341	1704 bp downstream
Tssr56342	transcription start site region 56342	1672 bp downstream
Tssr56343	transcription start site region 56343	1126 bp downstream
Tssr56344	transcription start site region 56344	1102 bp downstream
Tssr56345	transcription start site region 56345	1083 bp downstream
Tssr56346	transcription start site region 56346	1030 bp downstream
Tssr56347	transcription start site region 56347	1012 bp downstream
Tssr56348	transcription start site region 56348	989 bp downstream
Tssr56349	transcription start site region 56349	668 bp downstream
Tssr56350	transcription start site region 56350	639 bp downstream
Tssr56351	transcription start site region 56351	612 bp downstream
Tssr56352	transcription start site region 56352	593 bp downstream
Tssr56353	transcription start site region 56353	525 bp downstream
Tssr56354	transcription start site region 56354	511 bp downstream
Tssr56355	transcription start site region 56355	487 bp downstream
Tssr56356	transcription start site region 56356	469 bp downstream
Tssr56357	transcription start site region 56357	457 bp downstream
Tssr56358	transcription start site region 56358	439 bp downstream
Tssr56359	transcription start site region 56359	408 bp downstream
Tssr56360	transcription start site region 56360	361 bp downstream
Tssr56361	transcription start site region 56361	1457 bp upstream
Tssr56362	transcription start site region 56362	1685 bp upstream
Tssr56363	transcription start site region 56363	1972 bp upstream
Tssr60849	transcription start site region 60849	1063 bp upstream
Tssr60850	transcription start site region 60850	1010 bp upstream
Tssr60851	transcription start site region 60851	548 bp upstream
Tssr60852	transcription start site region 60852	519 bp upstream
Tssr60853	transcription start site region 60853	507 bp upstream
Tssr60854	transcription start site region 60854	490 bp upstream
Tssr60855	transcription start site region 60855	445 bp upstream
Tssr60856	transcription start site region 60856	418 bp upstream
Tssr60857	transcription start site region 60857	317 bp upstream