rs257348171 SNP Detail

Summary

• ID
  rs257348171
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:75237478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGAGGG CTGCATTGTT
  CTAAAAATTA AAACAATTAA CTCAGAACAG CTATTACTAT TTTCAAAGGC AGTTCCTCCG
  GATTTGATGT TACAGCTGGG TGTTTGCTGG GAAGTGGAGC TTGTTATGGA CTGCCGTCCA
  AATGGGGAAA TAAGGTGGTT GCAACAGCTT CATTATATGT TTAGACCTGG GTGTCACAAG
  R
  TGGTTATTGT AGCATGATTT GAAATTTGGG ATATAATTAT TCTTGGAGAT TTTTACTTTA
  AAACTGAAGG TCACTAATGA TTCATCTTAC AGGGGAAGGT GAGGGGAAGT CCAGCCGAGA
  GATGAAGTAG AGGATGGTGT TGAGAGCATG CGCGCTTACT GCAGGTGCCT CTGCCTTAGT
  GAATTCCTCT GGGTAGTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371935149	MGP_WTSI_7_82732616	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257348171					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371935149	MGP_WTSI_7_82732616	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:75237478 () rs orientation: forward

Symbol	Name	Function Class
Akap13	A kinase anchor protein 13	within coordinates
Rr400375	regulatory region 400375	247 bp upstream
Rr649260	regulatory region 649260	within coordinates
Rr649261	regulatory region 649261	1516 bp proximal
Tssr67242	transcription start site region 67242	1542 bp downstream
Tssr67243	transcription start site region 67243	1510 bp downstream
Tssr67244	transcription start site region 67244	1495 bp downstream
Tssr67245	transcription start site region 67245	1458 bp downstream
Tssr67246	transcription start site region 67246	1426 bp downstream
Tssr67247	transcription start site region 67247	1397 bp downstream
Tssr67248	transcription start site region 67248	1354 bp downstream
Tssr67249	transcription start site region 67249	1318 bp downstream
Tssr67250	transcription start site region 67250	1282 bp downstream
Tssr73048	transcription start site region 73048	158 bp downstream