rs257349543 SNP Detail

Summary

• ID
  rs257349543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152779265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGAGCCC AGGGAGAAAT
  AGAAAGGAAA ACCAATCCGA TTGGGCAGGC CGCTGCCATG GAAACTGGAG GCTGTGGTTG
  TATTGTCATA GTAACTGCCG TGTGTAGACA GGGTGACCCT CCCGTAGAGA AACGGGTTCC
  CTGGAAACTG CCCAGGATTC CCCACTTGGA TTCCCTGCCT TTTTAAAAGC CAGAAGTCGA
  R
  ATGGTTATCC GAGTAGGAAA GTCCATTTCT TCCTCCCTTA CTCTCCCAGC AAAAATTGGG
  GGAGACCCCG AAGCATTCAT TTTAGGCATT GCCAGTCCCC CAAGGGTGGA AACCACCTCC
  ATCGTTGCCT ATCTGAGCCG GGTAGGGAGA GGGCCGGGCC CGAGAAGAAA AGGCAGGTTA
  TGAAGGCCGG CGGCGAGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351959065	MGP_WTSI_1_154750644	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257349543					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351959065	MGP_WTSI_1_154750644	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152779265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi860	CpG island 860	within coordinates
Cpgi861	CpG island 861	1172 bp proximal
D1Mit502	DNA Segment, Chr 1 Massachusetts Institute of Technology 502	1753 bp distal
Gm70930	predicted gene, 70930	543 bp upstream
Rr396386	regulatory region 396386	887 bp downstream
Rr396387	regulatory region 396387	81 bp downstream
Rr396388	regulatory region 396388	1019 bp upstream
Rr420557	regulatory region 420557	903 bp distal
Rr420558	regulatory region 420558	378 bp distal
Rr420559	regulatory region 420559	53 bp proximal
Rr420560	regulatory region 420560	554 bp proximal
Smg7	SMG7 nonsense mediated mRNA decay factor	868 bp upstream
Tssr9437	transcription start site region 9437	641 bp downstream
Tssr9438	transcription start site region 9438	592 bp downstream
Tssr9439	transcription start site region 9439	289 bp upstream
Tssr14242	transcription start site region 14242	845 bp upstream
Tssr14243	transcription start site region 14243	764 bp upstream
Tssr14244	transcription start site region 14244	735 bp upstream
Tssr14245	transcription start site region 14245	427 bp upstream
Tssr14246	transcription start site region 14246	396 bp upstream