rs257352667 SNP Detail

Summary

• ID
  rs257352667
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133986912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATACATCCG GACTTTTGTT CTGAATAATA
  CAAAACAACA ACAGAGGTCC ATGTCTGACA TCAGCACAGC CTACCAGGTA ACAGAACTGG
  ATAGCTGCCA GGGATTTGTG AGCTGTGGCT GGCCAATCTC TACGTTCACT GAAGAAAGTC
  W
  GTGTACTGTT TCAGAACAGA CAAAAGAACA TAGTGGGTGA GTCTCCAGGT GAGACACGAC
  TCTGGGCAGG TGTTCCAGCA TATGTTGATG CTGGTATAAA Tcacacacac acacacacac
  acacacacac acaGCTCAGA AAGGACACTC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319981821	CHEV_1_135955751	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257352667					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133986912 () rs orientation: forward

Symbol	Name	Function Class
Gm19497	predicted gene, 19497	866 bp downstream
Gm57140	predicted gene, 57140	1874 bp upstream
Rr1740	regulatory region 1740	1020 bp upstream
Rr418780	regulatory region 418780	1617 bp distal
Rr418781	regulatory region 418781	within coordinates
Rr418782	regulatory region 418782	537 bp proximal
Rr418783	regulatory region 418783	726 bp proximal
Rr418784	regulatory region 418784	914 bp proximal
Rr418785	regulatory region 418785	1674 bp proximal
Rr418786	regulatory region 418786	1764 bp proximal
Rr418787	regulatory region 418787	1885 bp proximal
Tssr8846	transcription start site region 8846	1898 bp upstream
Tssr8847	transcription start site region 8847	1921 bp upstream
Tssr8848	transcription start site region 8848	1962 bp upstream
Tssr13763	transcription start site region 13763	1637 bp downstream
Tssr13764	transcription start site region 13764	1688 bp downstream
Tssr13765	transcription start site region 13765	1736 bp downstream