rs257354628 SNP Detail

Summary

• ID
  rs257354628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151857671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGCGTGG CGGGGCGTGG
  CGGGGCGGGG CGGGGCGGGG GGGGGGAGCA TGCAATTCAG TCCCAAGGTA GAGGAAAGGC
  TATGGGATCC TCTGTGTCCT CCAGCGAAGA GCGGGTCCAT AGGAAACACA GACAAAGAAG
  AGGATGCACG GAGGCCCTGG GGAACAGCAG CGTCACATTT CTGGTGCGTG GTGACGTAAC
  R
  GCATAGCTAA TCTTTCCCTA ATTCAAGCTG TCTCAGAATG CTGAGCCTAG CCAGCTCCCC
  TTCTGCAGGA CTCCTCAGTC TTCACCGGCC TACCCCATCA CACTGCAGGC AGCGCGGAGC
  TGAATCCCGG AGCCACGGGC ATGAGAAGGT CCTGACCCGC CCACACTGGA CTCTGACACA
  GAGAAACAGA AACTGGTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028250	CHEV_3_151814998	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257354628					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151857671 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm16198	predicted gene 16198			1413 bp upstream
Gm64753	predicted gene, 64753			256 bp upstream
Rr587468	regulatory region 587468			1606 bp distal
Rr587469	regulatory region 587469			within coordinates
Rr587470	regulatory region 587470			292 bp proximal