rs257355453 SNP Detail

Summary

• ID
  rs257355453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:20186197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCCACT AACTTATAGG
  TCATAAAACA TTACTGCAGC ATTCATTTGT GTATTAGTAA GGTTGGCAAC TTTACAATCT
  ATATTTCTTC TTGGAAAATT TTCTATTTTT AGGAAATGTC CAACTTTCCA TTTGGATCTT
  TCCACGTATG ACAATTTATG GTGGCATTTC AGGTTTTGAA AAATCAAATA AAATGAATAT
  Y
  TATTAAACAA GAACCTTGAA GCTTGGTTTA AAAAACATCA CATATAAAAT AAATCTAGTT
  CATCTTTTAT TTCTTTAAGA AATTATTCAC ATACATTTGC CTAAGTGTAT GGAGTGGTTA
  TATGCTACAA CTCCCTGTAG ACAGGGTCAG AGGACAACCT TTAGGAATCT GTTCTGTCCT
  TCTGCTGTGA AGTTTTCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379649364	MGP_WTSI_10_20030257	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257355453					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379649364	MGP_WTSI_10_20030257	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:20186197 () rs orientation: forward

Symbol	Name	Function Class
4933406P04Rik	RIKEN cDNA 4933406P04 gene	45 bp downstream
Bclaf1	BCL2-associated transcription factor 1	1700 bp upstream
Cpgi1349	CpG island 1349	1377 bp proximal
D10Csu2	DNA segment, Chr 10, Central Connecticut State University 2	1502 bp proximal
Gm67769	predicted gene, 67769	within coordinates
Rr428528	regulatory region 428528	1794 bp distal
Rr428529	regulatory region 428529	363 bp proximal
Rr428530	regulatory region 428530	1528 bp proximal
Rr428531	regulatory region 428531	1560 bp proximal
Tssr92593	transcription start site region 92593	1912 bp upstream
Tssr96944	transcription start site region 96944	1788 bp downstream