rs257368253 SNP Detail

Summary

• ID
  rs257368253
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75368428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTTTAT CCCTGAGTCC
  TGGCTGCCAG TGACTGTCTA GCGAGGTCTC CAGTTAGGTC TAATTCCATG TTTGTGCTGG
  ACGCAGCTCC TTTAGCAGCA TCCCCAAGCC CTGCTACAGC CGAATTACGC TCATAGTAAG
  GACCACCAAC TAGTCCCCGC CCCCCAACAC TTCCCCACCC CCCCGCACCC GCACACCCCC
  C
  CCCCCCAGCT AGCCCGGTAA GAAGCGCAGG CGCACGAGGG TTGGGCACGT CGGGAACTAG
  GGGCGGGGCA TTGAGCCCCG CCCATCTGCC CCGCCCACTC GATCCACCCA CTGATTTCGC
  CACCTTAGGC CAGTGGCCCC TAATTCTGCT GCGGGCAGCG CAGGATGCCC GGAGGCTGAA
  GTGGTGGAGC CGGGAGGAGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	ST/bJ	SWR/J
ss391575946	MGP_WTSI_14_75530795	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	ST/bJ	SWR/J
rs257368253					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391575946	MGP_WTSI_14_75530795	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75368428 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	196 bp distal
Cpgi6737	CpG island 6737	106 bp proximal
Gm62951	predicted gene, 62951	367 bp upstream
Lcp1	lymphocyte cytosolic protein 1	142 bp upstream
Lrrc63	leucine rich repeat containing 63	107 bp upstream
Rr297500	regulatory region 297500	within coordinates
Tssr4477	transcription start site region 4477	354 bp upstream
Tssr126606	transcription start site region 126606	119 bp upstream
Tssr126607	transcription start site region 126607	238 bp upstream
Tssr126608	transcription start site region 126608	285 bp upstream
Tssr126609	transcription start site region 126609	544 bp upstream
Tssr126610	transcription start site region 126610	596 bp upstream
Tssr126611	transcription start site region 126611	1033 bp upstream
Tssr126612	transcription start site region 126612	1058 bp upstream
Tssr129761	transcription start site region 129761	383 bp upstream
Tssr129762	transcription start site region 129762	366 bp upstream
Tssr129763	transcription start site region 129763	339 bp upstream
Tssr129764	transcription start site region 129764	45 bp upstream
Tssr129765	transcription start site region 129765	17 bp downstream
Tssr129766	transcription start site region 129766	587 bp downstream
Tssr129767	transcription start site region 129767	629 bp downstream