rs257370867 SNP Detail

Summary

• ID
  rs257370867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150871038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGATGCAT TTGGAGGAAA GGGAGTGGTG
  TTGTGTAAAT TGACTATTCA ACAAATGTGA AACAGATTTG TTTAATTGTG TTAAACAAAT
  CTTAAATTAA AATTAAATCt taattaagtt aaatttccta tatcattact gattcctgcc
  Y
  acttgtgacc agttattgag aatcgtattg aaatatagga ctctgtggat ctgtcaatct
  tcttgaagtt ctgtgaggtt ttgctttgtg ccttttgaac gtttgtaact aagtgcagag
  agtattatgt cctcttgatt gatAAACATA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320052996	CHEV_1_152842417	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257370867					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150871038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	1494 bp distal
Gm29188	predicted gene 29188	within coordinates
Hmcn1	hemicentin 1	1852 bp upstream
Rr420193	regulatory region 420193	1746 bp distal
Rr420194	regulatory region 420194	1407 bp distal
Rr420195	regulatory region 420195	1293 bp distal
Rr420196	regulatory region 420196	251 bp distal
Tssr14168	transcription start site region 14168	1838 bp upstream