rs257379846 SNP Detail

Summary

• ID
  rs257379846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48051738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCACCAC CACCATCACC
  ATCACCATCA TCACCACCAC CACCAGCAAC AGCAGCCGTC CATTCCTCCT CCCTCCGGCC
  CCGAGGACGA GGTACTGCCC AGCACCTCCA TGTACTTCAA GCAGTCTCCG CCTTCTACAC
  CGACCACTCC AGGCTTCCCC CCGCAGGCGG GGGCGCTGTG GGACGACGAG CTGCCCTCTG
  Y
  GCCTGGCTGC ATCGCTCCGG GACCGCTGCT GGACCCGCAG ATGAAGGCGG TACCCCCCAT
  GGCCGCTGCT GCGCGCTTCC CGATCTTCTT CAAGCCCTCA CCGCCACACC CTCCCGCGCC
  CAGTCCAGCC GGCGGCCACC ACCTCGGCTA TGACCCCACG GCCGCAGCTG CACTCAGTCT
  GCCCCTGGGA GCCGCGGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss361430144	MGP_WTSI_4_48064610	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs257379846					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361430144	MGP_WTSI_4_48064610	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48051738 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14281	CpG island 14281	within coordinates
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr591933	regulatory region 591933	238 bp distal
Tssr37209	transcription start site region 37209	1772 bp downstream
Tssr37210	transcription start site region 37210	957 bp downstream
Tssr37211	transcription start site region 37211	470 bp downstream
Tssr37212	transcription start site region 37212	441 bp downstream
Tssr37213	transcription start site region 37213	366 bp downstream
Tssr37214	transcription start site region 37214	342 bp downstream
Tssr37215	transcription start site region 37215	294 bp downstream
Tssr37216	transcription start site region 37216	203 bp downstream