rs257387151 SNP Detail

Summary

• ID
  rs257387151
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121422433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATTTCGCT GTGTACATTA AAAACGTCTG
  GTGCCGGTAT CCTCGGGTGA GTCAACCCTC GGGAACGCCA GTCCGTCTAA AAACTGCCGG
  CGGCGGCAGC TGGACCAAGG GTGGGAGCGG CGAGTCAACT CCGGCCAGGG CAgccccggt
  R
  cccgggcggc cgccagggcc catcccgggc gagcgcgagg ctgcggggct cccggggccg
  cggccccgcg cTGACTCAGC Acgccgcctc cccgacccct gggcgcgccc ccgcccggcc
  cctccggccc cgtccgcccc caccggcctc                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513549	CHEV_10_121023584	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257387151					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121422433 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	within coordinates
Rr402304	regulatory region 402304	355 bp downstream
Rr402305	regulatory region 402305	198 bp upstream
Rr440247	regulatory region 440247	within coordinates
Rr440248	regulatory region 440248	249 bp proximal
Tbk1	TANK-binding kinase 1	within coordinates
Tssr96043	transcription start site region 96043	286 bp downstream
Tssr96044	transcription start site region 96044	265 bp downstream
Tssr99623	transcription start site region 99623	645 bp upstream
Tssr99624	transcription start site region 99624	618 bp upstream
Tssr99625	transcription start site region 99625	558 bp upstream
Tssr99626	transcription start site region 99626	182 bp downstream
Tssr99627	transcription start site region 99627	202 bp downstream
Tssr99628	transcription start site region 99628	285 bp downstream
Tssr99629	transcription start site region 99629	313 bp downstream
Tssr99630	transcription start site region 99630	341 bp downstream
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	852 bp downstream