rs257390626 SNP Detail

Summary

• ID
  rs257390626
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12772837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGGAGG CTTGAGGCAT
  CAAGTTGGCT TGAGCCCAGG CGCTCAGGGA TACCCTAGGC AACACATCGA GACTCTTGTT
  CCTTAAAATA GATTTCTATT GTGCAACAGG CTGTGAGCAA CTGTGTAGTT CTAGGGTCCA
  AGGTGGACGT GGGTATAGGA CTCATAACTG CGGCTTAGAG AACAGCAGAA GTGGCATTGG
  S
  TCTCTCGAGT GGCATTGTGC CTCTCGATTG GCTTATGTTG AGTGAGCTTA GGGTGCTTGG
  GAGGCAGAAG GAAATAGCTC AGGATGGGTC AGTGACTTCA GGCTGTCATC TAGGAATCCA
  GCCGAAGCCA GAGTCTAAAT GCTTCTTGTT GCTTGTCTGG TCACAGCTTG AAAAACATGG
  CCAGAACAGG TTCGGACTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370654998	MGP_WTSI_7_13624259	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257390626					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370654998	MGP_WTSI_7_13624259	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12772837 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18335	CpG island 18335	107 bp distal
Gm71833	predicted gene, 71833	within coordinates
Rr400106	regulatory region 400106	396 bp downstream
Rr642445	regulatory region 642445	922 bp distal
Rr642446	regulatory region 642446	1244 bp distal
Rr642447	regulatory region 642447	648 bp distal
Rr642448	regulatory region 642448	145 bp distal
Rr642449	regulatory region 642449	856 bp proximal
Tssr64535	transcription start site region 64535	1210 bp downstream
Tssr64536	transcription start site region 64536	863 bp downstream
Tssr70652	transcription start site region 70652	1243 bp upstream
Tssr70653	transcription start site region 70653	1218 bp upstream
Tssr70654	transcription start site region 70654	1078 bp upstream
Tssr70655	transcription start site region 70655	959 bp upstream
Tssr70656	transcription start site region 70656	941 bp upstream
Tssr70657	transcription start site region 70657	603 bp upstream
Tssr70658	transcription start site region 70658	588 bp upstream
Ube2m	ubiquitin-conjugating enzyme E2M	635 bp upstream