rs257394197 SNP Detail

Summary

• ID
  rs257394197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:31121543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAATCCAT AACAACTAAT
  TCTGATATTG GTATTTTTCC CCTGGAGACA TTAAATATTA AATGGATTCT TTAAAACTGA
  TGAATTCTTT ATTGTGAATT CACTAGTACC TAAAGTTTCT CACACCGCTG GAAAGTGAGG
  TGGAGTGTGA ACAATGGTTT TTGACACTGA CCCATTAAGT CCCACCCAAT ATATAAAACT
  Y
  GGTCTCCCCA CCCTTCTCTT CTTATCCCCG CTCAATGTAG CTGTTTCCCA GTGACATCTT
  ATCAGGGATC ACAGATACAG CCCTACCAAC TGTGTGGAAG CTGAAAGAAT CGAAAAGTTC
  GTGTGTATAA ACATTAACTG TTTCTACTTA AGACTTATCT TTTTTTCCCA CCTCAGTCAA
  AAAGTTTCAA GCAAGATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889591	CHEV_9_31017832	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257394197					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31121543 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	Intron
Gm69111	predicted gene, 69111	1777 bp upstream
Rr401293	regulatory region 401293	1475 bp upstream
Rr675968	regulatory region 675968	within coordinates
Rr675969	regulatory region 675969	664 bp proximal
Rr675970	regulatory region 675970	1530 bp proximal
Rr675971	regulatory region 675971	1744 bp proximal
Rr675972	regulatory region 675972	1788 bp proximal
Tssr84218	transcription start site region 84218	1087 bp upstream
Tssr88644	transcription start site region 88644	633 bp upstream
Tssr88645	transcription start site region 88645	1558 bp downstream