rs257395190 SNP Detail

Summary

• ID
  rs257395190
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:16111900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCCGAGA GAGTGTTCGG
  AATCAAGCGA TCAGGGTCCA TGTACAAGCT AGCATGACAT AACTATTGCT ATTGTGGTAG
  GAAGCAAGAA CTGCTTTGCA GGAACAGGCC TGAAAAATGT CTGCACTTGT GTTTATTTGT
  TACCGCTTCA CAAACATTTC TGTAAGAAAA GAATGTTGCA TTGTTGGGAT TTGAGAAGAC
  M
  CCCCCCCCCC CCCCGTTTTT TTCTTTTCAT TTTTCTTTTT TTTGCTATCT GGAGCATTCC
  ATGTGCTGGC TCCAAGAACC CATTACCTTG GGGCCTGGCT TGCTTATCGT CAGGAGCAAA
  ATATCATAAT CACACATGGT TCCCAATGCT GTTCCCTTCC CTTAACCAAG GTCTTTATAT
  TGAAATCCAG TTAGGTAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401853787	MGP_WTSI_19_16209026	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257395190					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401853787	MGP_WTSI_19_16209026	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:16111900 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10651	CpG island 10651	446 bp distal
Gnaq	guanine nucleotide binding protein, alpha q polypeptide	Intron
Rr544689	regulatory region 544689	1695 bp distal
Rr544690	regulatory region 544690	1915 bp distal
Rr544691	regulatory region 544691	1836 bp distal
Rr544692	regulatory region 544692	18 bp distal
Rr544693	regulatory region 544693	584 bp proximal
Tssr155379	transcription start site region 155379	1815 bp downstream
Tssr155380	transcription start site region 155380	1763 bp downstream
Tssr155381	transcription start site region 155381	1741 bp downstream
Tssr155382	transcription start site region 155382	1626 bp downstream
Tssr155383	transcription start site region 155383	1391 bp downstream
Tssr155384	transcription start site region 155384	1208 bp downstream