rs257404340 SNP Detail

Summary

• ID
  rs257404340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85429904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCCTTAC AGTGTCTACA
  TTGGGCCAGC AGGACCCTTC AGCATCTTCC CTAACAGCCG GCTGAAGCGC AGACCAAGCC
  ATAGTGAGCT GGACTTGGCT GACGGTGAGT TTGTGTCTCG GTGTGTACTT GTGGGGTGCC
  TGCAGCTCAT GTCTGATTGG CCTGTACTCT GCCACAGGAA GAAGTATTTT GGGAAGTTCA
  Y
  ATACACCCCA ACACAGGACA ACTCACACAA GTGATAGCTA ATGCAAGACT ACAGTACGGA
  GCCTAGCTTG GGGGATTACC CTGTAATCCA GACTGACACA GGAGAACCAG TTCAGAAGCC
  AACCTGGGCT ATGTGAGTCC CCAACAAGCA AGCATTATAA CCAGAGACAT GGCCACAATA
  GGATATGGCA GCCACAAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375404539	MGP_WTSI_8_87227174	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257404340					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404539	MGP_WTSI_8_87227174	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85429904 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20707	CpG island 20707	1266 bp distal
Cpgi20708	CpG island 20708	392 bp proximal
Cpgi20709	CpG island 20709	1788 bp proximal
Lyl1	lymphoblastomic leukemia 1	within coordinates
Nfix	nuclear factor I/X	1437 bp downstream
Rr187001	regulatory region 187001	within coordinates
Rr368567	regulatory region 368567	1242 bp upstream
Rr401025	regulatory region 401025	1790 bp downstream
Tssr78433	transcription start site region 78433	1778 bp downstream
Tssr78434	transcription start site region 78434	1506 bp downstream
Tssr78435	transcription start site region 78435	1477 bp downstream
Tssr78436	transcription start site region 78436	1448 bp downstream
Tssr78437	transcription start site region 78437	1393 bp downstream
Tssr78438	transcription start site region 78438	1365 bp downstream
Tssr78439	transcription start site region 78439	116 bp upstream
Tssr82116	transcription start site region 82116	1549 bp upstream
Tssr82117	transcription start site region 82117	1851 bp downstream
Tssr82118	transcription start site region 82118	1887 bp downstream
Tssr82119	transcription start site region 82119	1915 bp downstream
Tssr82120	transcription start site region 82120	1992 bp downstream