rs257416270 SNP Detail

Summary

• ID
  rs257416270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101897704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGAATAGA GAGCACAGCT
  CGGTATGAAG AGAACATCAA GGATGCTTAA AGACAGGAGG GTCAGCACAA CTCCCAGTCA
  AGGCTCTGAT ACACATCAGA AAATGTAGAT ACCCAACCTC TGCAGTTCCC ACCAAGCACC
  AGGGACGAAA GACAAACACC TTGCCTCACA TCCCCTTCCT GATCAAAATT TAAAAACCAG
  Y
  AGAGACTTAA GTTAGACTCG TAGCACTTTT CCCTCCAGAA TCTTGCCTCT GCCCCCTTCC
  TTTTCCTAGC AGGCCAAATG GCCCAACCTA CTCTCCCCAC TGGTTGGAAC CAGTAAGTGC
  TAGGAGACAG GAACCTTAAA GCTAGTTCCC CCTGACCCCC CTCCCACACA ACACACCACT
  ACACACACAC TCCTAGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353640	CHEV_7_109397011	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257416270					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101897704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	1145 bp proximal
Rhog	ras homolog family member G	within coordinates
Rr652561	regulatory region 652561	966 bp distal
Rr652562	regulatory region 652562	within coordinates
Rr652563	regulatory region 652563	1581 bp proximal
Tssr2354	transcription start site region 2354	1762 bp upstream
Tssr68327	transcription start site region 68327	739 bp downstream
Tssr68328	transcription start site region 68328	1123 bp upstream
Tssr68329	transcription start site region 68329	1205 bp upstream
Tssr68330	transcription start site region 68330	1723 bp upstream
Tssr73938	transcription start site region 73938	1410 bp upstream
Tssr73939	transcription start site region 73939	865 bp downstream
Tssr73940	transcription start site region 73940	915 bp downstream
Tssr73941	transcription start site region 73941	957 bp downstream
Tssr73942	transcription start site region 73942	1045 bp downstream
Tssr73943	transcription start site region 73943	1578 bp downstream
Tssr73944	transcription start site region 73944	1589 bp downstream
Tssr73945	transcription start site region 73945	1630 bp downstream
Tssr73946	transcription start site region 73946	1826 bp downstream
Tssr73947	transcription start site region 73947	1969 bp downstream
Tssr73948	transcription start site region 73948	1994 bp downstream