rs257419863 SNP Detail

Summary

• ID
  rs257419863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11323439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGATTCT GTGGGATCCT
  GATCTAGTGA TATTGGGGGT CCAATCCTAC ATTCAGGAGG GACGGGGGGG GGGGGGTTAG
  AGCACTTGTT TCTGGTTAAT TGGGAGTTCA GCCAGAGCCA CCAGTTCTTT TTCTGCCTTG
  CCTTGGACTC AGAGTATACC CTGGTGATAC TGGAGGCTGA GAAAATTAGA GGCCCAGCGC
  Y
  TGAGCTCCCA TTGGCAGGGT TTCAACACTT AGGTTGCACA ACACAGCCAA GGAACCACAA
  GGATGTTCCA CAACACTAGG TTCATGTCTA GGGTTTGGAG AGGCCCAGCA CAGGATGTCT
  AGCTGAGACA GGATATCTAG TTGAGACAGG ATGTCTAGCT GAGACTAGAA GCTGTGACAG
  AACCCAGAAA GGCCCAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360594918	MGP_WTSI_4_11250586	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257419863					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360594918	MGP_WTSI_4_11250586	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11323439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14033	CpG island 14033	933 bp distal
Dpy19l4	dpy-19 like 4	1302 bp upstream
Gm26663	predicted gene, 26663	within coordinates
Rr588912	regulatory region 588912	1464 bp distal
Rr588913	regulatory region 588913	812 bp distal
Rr588914	regulatory region 588914	1280 bp distal
Rr588915	regulatory region 588915	1161 bp distal
Tssr36477	transcription start site region 36477	1526 bp downstream
Tssr36478	transcription start site region 36478	1502 bp downstream
Tssr36479	transcription start site region 36479	1191 bp downstream
Tssr40926	transcription start site region 40926	1350 bp upstream
Tssr40927	transcription start site region 40927	1293 bp upstream