rs257419918 SNP Detail

Summary

• ID
  rs257419918
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170825288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGTCATC TAGAATTAAG
  GATTCCTTAG TGCTTAGTAC TGGCCAACAT TATAGCCCTC AGCCTGAGGT CTGGAAACCC
  AGTCCCTCTA GACTCTGCTG CATTAAGTAG AGTCTTTGAG TTCTGGAAGA GAGCATCACT
  AGGTGGCTTC CTACAGCAAA ATGACAGAAA ACAGAAAACA GCTTACATAG ACCCCCCCCC
  C
  AAAAAATGGC TTTACCATGT GGCATACCAA GTTTCTTAAA CATGTAACTA TAAATTATAG
  ATAACGTGTA ATAATATTGT TGCTGGTGGT GAAACCTTTA CCCAGTGTTT CTAGTCTCTC
  GTCATCATCA GAAAACCTTT TTCTTTTAAT GAGGCAAAGT AAGGAATTAG GAGGAAGTTG
  ATTTCAGAAC GAAAGTGCAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320115469	CHEV_1_172927850	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257419918					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170825288 () rs orientation: forward

Symbol	Name	Function Class
Rr396544	regulatory region 396544	within coordinates
Rr396545	regulatory region 396545	712 bp upstream
Rr423178	regulatory region 423178	663 bp distal
Rr423179	regulatory region 423179	746 bp distal
Rr423180	regulatory region 423180	112 bp proximal
Tssr9941	transcription start site region 9941	846 bp upstream