rs257427419 SNP Detail

Summary

• ID
  rs257427419
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64697836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTATACC TGTTCCTAAC
  TTGAAAAAAA ATTATAATCA TATCAAATTA GGCCTGCAGA CCTGTCCAAT CATGTTTTCA
  GGCATTAGGT ATCCAGGAAG TGTTTGTTAA AGCAATTGCT TAATGGACAA TATACAGTCT
  ATTATTTTAA AGAAAGTATA GTGGTGATAA GAATATTGCC TTGAGGAGAG ATGGCTCAGC
  R
  GGTAAGGGCA CTGACTGCTC TTCCAAAGGT CCTGAGTTCA AATCCCAGCA ACCACATGGT
  GGCTCACAAA CATCCGTAAT GAGATCTGAC TCCCTCTTCT GGGGTGTCTG AAGACAACTA
  CAGTGTACTT ACATATAATA AGTAAATAAA TCTTTGAAAA AAAAAAAGAA TATTGCCTTG
  AGTAGTGTGG GGAAAACATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322985864	CHEV_9_64638361	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257427419					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64697836 () rs orientation: forward

Symbol	Name	Function Class
Rr401455	regulatory region 401455	822 bp downstream
Rr681316	regulatory region 681316	700 bp distal
Rr681317	regulatory region 681317	141 bp proximal
Rr681318	regulatory region 681318	710 bp proximal
Rr681319	regulatory region 681319	1513 bp proximal
Tssr2909	transcription start site region 2909	240 bp downstream
Tssr85622	transcription start site region 85622	897 bp downstream
Tssr85623	transcription start site region 85623	877 bp downstream
Tssr85624	transcription start site region 85624	402 bp upstream
Tssr90157	transcription start site region 90157	268 bp downstream