rs257431361 SNP Detail

Summary

• ID
  rs257431361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:70109690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTAAAAA TGGTAATTTA
  TGGGTGATTA TCAGTCTGTA TAAAAGTGAT AAAAGCTGAT TTTAGGTAGT GTTTATTCAG
  GAAAACTTTA TTTTTATTTT CTCACCCCTT CCCTTTTCCC TTCCTAATCA GTGCTTTGGT
  TTTACCTTAA CAGGTGAACG CTTATGCTAT GAAGAAGATA GTTGGTTCAG GTTTCTTAGT
  Y
  AGCCAAGTGG AAATTTCAGT GTGAAGTGAT GAAAATTTAG AGTTATGAAA GTAAAAAATG
  AAGTTACAGA ATTGGGTGTC TACTAGGTAC TTTATTTCTG GGTTCAAGCC CCCCCCCATT
  TGTAGATATA TATATACCTT TATCTAAGAC CTTTAGCTAT TCACATCGAA GTGAATATTT
  TTCTTTCTTA AGTTCATCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325235735	CHEV_16_70313047	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257431361					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:70109690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8364	CpG island 8364	1034 bp proximal
Gbe1	1,4-alpha-glucan branching enzyme 1	1147 bp upstream
Rr517848	regulatory region 517848	657 bp proximal
Tssr138939	transcription start site region 138939	1165 bp upstream
Tssr138940	transcription start site region 138940	1196 bp upstream
Tssr138941	transcription start site region 138941	1209 bp upstream
Tssr138942	transcription start site region 138942	1255 bp upstream
Tssr138943	transcription start site region 138943	1289 bp upstream
Tssr138944	transcription start site region 138944	1317 bp upstream
Tssr138945	transcription start site region 138945	1675 bp upstream
Tssr138946	transcription start site region 138946	1865 bp upstream