rs257438834 SNP Detail

Summary

• ID
  rs257438834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51182309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTCTGATC TTCTGTCTAC TGATACTCCA
  TCTGACAATA CCTGGCCAGA ACCTCTACCC TCGGTACAGC AAGCCTCTTG CCTGTAGAAC
  TGTGGCATAC ACCCGCACAC TACAGTTTCT CTCAGCTCTG CCTCCCTTAT AGGAATGGTT
  Y
  ACCTCCTCCT AGAGGAGGTG GTTGCCCCAG ATCTAAAGGC GGGGGTGGGG GTGGGGAGTC
  AATCCTAAGG ACAGTAGAAA ATGAACCTTG CTTGTGGGAG AGGAAGCAGG GGGCAGGTGT
  ACTATCTACC ACCTGTTCCC TAAGCTGTGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323667626	CHEV_11_51104984	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257438834					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51182309 () rs orientation: forward

Symbol	Name	Function Class
Col23a1	collagen, type XXIII, alpha 1	within coordinates
Cpgi2834	CpG island 2834	552 bp distal
Rr446561	regulatory region 446561	1552 bp distal
Rr446562	regulatory region 446562	1039 bp distal
Tssr101277	transcription start site region 101277	1728 bp downstream
Tssr101278	transcription start site region 101278	1471 bp downstream