rs257451791 SNP Detail

Summary

• ID
  rs257451791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:49430559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCC CCGCCACCCG GAGGGGGCGG
  Y
  GAGCGGGGGG CGGGGCCGGG GCGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss921313536	MGP_WTSI_12_49383776	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257451791					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921313536	MGP_WTSI_12_49383776	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:49430559 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4581	CpG island 4581	within coordinates
Foxg1	forkhead box G1	within coordinates
Gm34304	predicted gene, 34304	1948 bp upstream
Gm43517	predicted gene 43517	1398 bp upstream
Rr465759	regulatory region 465759	759 bp distal
Rr465760	regulatory region 465760	23 bp distal
Rr465761	regulatory region 465761	within coordinates
Rr465762	regulatory region 465762	1593 bp proximal
Tssr3838	transcription start site region 3838	556 bp upstream
Tssr113389	transcription start site region 113389	1781 bp downstream
Tssr113390	transcription start site region 113390	1698 bp downstream
Tssr113391	transcription start site region 113391	1109 bp downstream
Tssr113392	transcription start site region 113392	1085 bp downstream
Tssr113393	transcription start site region 113393	974 bp downstream
Tssr113394	transcription start site region 113394	671 bp downstream
Tssr113395	transcription start site region 113395	141 bp upstream
Tssr113396	transcription start site region 113396	349 bp upstream
Tssr113397	transcription start site region 113397	482 bp upstream
Tssr113398	transcription start site region 113398	511 bp upstream
Tssr113399	transcription start site region 113399	580 bp upstream
Tssr113400	transcription start site region 113400	590 bp upstream
Tssr113401	transcription start site region 113401	734 bp upstream
Tssr113402	transcription start site region 113402	784 bp upstream
Tssr113403	transcription start site region 113403	1159 bp upstream
Tssr113404	transcription start site region 113404	1185 bp upstream
Tssr113405	transcription start site region 113405	1210 bp upstream
Tssr113406	transcription start site region 113406	1413 bp upstream
Tssr113407	transcription start site region 113407	1668 bp upstream
Tssr113408	transcription start site region 113408	1876 bp upstream
Tssr116231	transcription start site region 116231	1946 bp upstream