rs257452045 SNP Detail

Summary

• ID
  rs257452045
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157404564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCAAAAA TAAAAAAATG
  GACCTCTCCT GTCTTGTAGT GTCCTAGGAC CCTGCAGGGC AGTGGGGGTG CACCAAAAAG
  TTCTTTTGTG GCTTCTTTTG CGACTGCGTC ACATTATCCA TAAAGCTGGG CAATGTACTC
  ATTGTGGAGG GGCACACCAC TTGGAATGGG GAGGGGGACC ACAAGAAGAC AAGAATAAAC
  Y
  GAGATGCCCA TATCTGCCTC ATTTAAATCT GTCCTGAGAT AAAGGACTAT TTCTCATCCG
  CAATGAGAAG AGTGGAATTC ATCTGTCCCA GAATAAGGGA CATTTTCCCT TCCCCACGAT
  GATGGGTGAA TTTATTTGGT GGTGCCGAGA TAAGGTACCA TGGCAGGTTT TCTATCTGGG
  AAAGATGGAG AGAAAATAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356262055	MGP_WTSI_2_157388380	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	C	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257452045					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	C	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356262055	MGP_WTSI_2_157388380	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157404564 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12576	CpG island 12576	945 bp distal
Gm56190	predicted gene, 56190	197 bp upstream
Nnat	neuronatin	122 bp downstream
Rr568544	regulatory region 568544	within coordinates
Tssr721	transcription start site region 721	187 bp upstream
Tssr21270	transcription start site region 21270	1969 bp downstream
Tssr21271	transcription start site region 21271	1855 bp downstream
Tssr21272	transcription start site region 21272	1816 bp downstream
Tssr21273	transcription start site region 21273	1159 bp downstream
Tssr21274	transcription start site region 21274	913 bp downstream
Tssr21275	transcription start site region 21275	861 bp downstream
Tssr21276	transcription start site region 21276	748 bp downstream
Tssr21277	transcription start site region 21277	730 bp downstream
Tssr21278	transcription start site region 21278	697 bp downstream
Tssr21279	transcription start site region 21279	612 bp downstream
Tssr21280	transcription start site region 21280	500 bp downstream
Tssr21281	transcription start site region 21281	426 bp downstream
Tssr21282	transcription start site region 21282	353 bp downstream
Tssr21283	transcription start site region 21283	324 bp downstream
Tssr27183	transcription start site region 27183	1761 bp upstream
Tssr27184	transcription start site region 27184	1671 bp upstream
Tssr27185	transcription start site region 27185	760 bp upstream
Tssr27186	transcription start site region 27186	630 bp upstream