rs257456708 SNP Detail

Summary

• ID
  rs257456708
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123277876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCTCCC AATCATCTGC
  AGCCCATGGC CTGCTCAATC GAGAGTTCCT CGAAGGGGGA AAAAGACACT TGAAAACAAA
  TTTTTTTAGT CTAGTTTTTT ACTTACCCAC TCAGCCCGGC GCCATGGCGT CTAGAAGAAA
  AAGCTGGCCG GCGCTTTTGG AGATATTATA AAAATAACAG GTCTTTTTTT GGGAGGTGGG
  K
  GATGTTTGGT TGTTTAGTTG GGGGGAAACC TGGGGTTCTG GTGTCCCTTT GTTACCTTCT
  TTGTAAGTTA CACTCGTGGT ATTTCTGCTC CTTCCACGAC TGCAAACTTT CCAGGGTTGG
  GCTGGCAAAA AGGCGGCTTC GCTGAGGGCT GTTTAGTGCT CTGGATTTAC CAATGGTGTG
  ATCGTCATTA AGAAACAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366533353	MGP_WTSI_5_123589822	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257456708					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366533353	MGP_WTSI_5_123589822	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123277876 () rs orientation: forward

Symbol	Name	Function Class
AI480526	expressed sequence AI480526	within coordinates
Cpgi16575	CpG island 16575	1893 bp distal
Cpgi16576	CpG island 16576	466 bp distal
Cpgi16577	CpG island 16577	1472 bp proximal
Gm38102	predicted gene, 38102	within coordinates
Rr367945	regulatory region 367945	1778 bp upstream
Rr378574	regulatory region 378574	within coordinates
Rr399342	regulatory region 399342	1411 bp upstream
Tssr48762	transcription start site region 48762	1178 bp downstream
Tssr48763	transcription start site region 48763	1103 bp downstream
Tssr48764	transcription start site region 48764	1411 bp upstream
Tssr48765	transcription start site region 48765	1616 bp upstream
Tssr53209	transcription start site region 53209	723 bp upstream
Tssr53210	transcription start site region 53210	156 bp downstream
Tssr53211	transcription start site region 53211	287 bp downstream
Tssr53212	transcription start site region 53212	322 bp downstream
Tssr53213	transcription start site region 53213	898 bp downstream
Tssr53214	transcription start site region 53214	1266 bp downstream
Tssr53215	transcription start site region 53215	1467 bp downstream
Tssr53216	transcription start site region 53216	1531 bp downstream