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rs257493441 SNP Detail
Summary
  • ID
    rs257493441
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:6365043 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTAGTTCAA CCTAATGTGC
    TTTTGGTCTG ATTCATCCAA ATAAGGCATG GCCAGACCCA CATTCCTGAG GTTCTGTGTC
    TAAAGGCCTT ACAGCTCGGG AGCCAACTCC AGCAGACGCT ATGGTGAAGG GTCTTCCACA
    GCACCGACTT TCCCATACTC AGGCTTTGTT TATGAGGCAG GGCCTCACAC TTACAGCTCA
    R
    GCTGTATGGA ACTCACTATC CTCCTGTCTC CATCTACCTA GAGGTGGGAT TTACAGGCGT
    GTGAAGCCTT TGAGAGCACG CCTTAGGCCA CATGAGGAAA TGAGAAGACC TTGGGGTATT
    GGGGGTCGGG GAGAAAAAAA TTACAGGTAG ACTCTGACCA GGATCGTGTT TAAATAGCTT
    CCTCCTGGAG AAAACACAAG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss382296431 MGP_WTSI_11_6315046 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257493441 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss382296431 MGP_WTSI_11_6315046 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:6365043 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2558 CpG island 2558 259 bp proximal
Gm71788 predicted gene, 71788 150 bp downstream
Ppia peptidylprolyl isomerase A 824 bp upstream
Rr246944 regulatory region 246944 within coordinates
Rr402411 regulatory region 402411 734 bp upstream
Tssr100250 transcription start site region 100250 731 bp upstream
Tssr100251 transcription start site region 100251 760 bp upstream
Tssr100252 transcription start site region 100252 787 bp upstream
Tssr100253 transcription start site region 100253 1184 bp upstream
Tssr100254 transcription start site region 100254 1215 bp upstream
Tssr100255 transcription start site region 100255 1286 bp upstream
Tssr106715 transcription start site region 106715 606 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory