rs257498101 SNP Detail

Summary

• ID
  rs257498101
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127655835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCTCCTT GGTGGGCCCA
  TGCTGGGGGC CCATCCCTTC CCCCTGAGGG ACCAGCCACA TGATGGTATA GTATAGAATG
  GAGTTTATTT AGGACATAGG GAGGGGAGTT AAGAGGGTAG TAGAGGCAGA GAAAGGCAGG
  AGGGGGAGGG GAGGGGAGGG AGATGAGTAG AGGCTGACAA GAGGGAATGG GGAGAGAGGG
  R
  GCAAGAGAAA GCAAGAGAGC AAGAGAGGAG CAAGAGAGTG AGGAGGGGGC AAGCAGCCCC
  TTTTAAGGTG GGGTAGGGCC TACCTTTCTT GTTGCCAGGT AACTGTGGGG CAGAACTTTG
  ACAATTGGTA TGGGAGGGAT TTTTTTTTTT AAAATATGAC AATACTATTT TGAGTGGGGA
  GTGAACCTGG TGCAATCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320957608	CHEV_3_127565104	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257498101					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127655835 () rs orientation: forward

Symbol	Name	Function Class
Gm35585	predicted gene, 35585	within coordinates
Gm43652	predicted gene 43652	998 bp downstream
Rr584887	regulatory region 584887	496 bp distal
Rr584888	regulatory region 584888	327 bp proximal
Tssr31614	transcription start site region 31614	571 bp downstream