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rs257505681 SNP Detail
Summary
  • ID
    rs257505681
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:48043676 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCCGGCACT GCTGGTAGAG
GGTGGGTGGG AGACCCTCCT CCAAAGTCAT AGGTCACCTA TGCAGCAGTC TGGCAGCCCA
GCCAACTCCG AAGAAGAGAG GGTATGGCCA CACAGGGACA GTCAGCACAT ATGATCTCAG
ACACCAGGGA GGGCCCCGGT AATCCAACGC TACAGGTTAG AAGCTGTTTC ACCATCCTTG
Y
GACAGCCAGT GAGTGGCTCT CTGACTTTCA GTGTGTCTAG AGCCTTCCTT GAGGATTTGA
GATGGCCTTG AATAGACTCT AGGGTCCCCT TACTTCCCTT AAGAACAACG TGGCCTCTGT
ATGCAGCCAC CCGTGCCTCT GTGGTTGGAA GCCCCTCTGA CCGCCCTGAT CAGGTGGGGA
ACTGAGGCTG CTATCTTCTC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398353033 MGP_WTSI_17_47869700 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257505681 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398353033 MGP_WTSI_17_47869700 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:48043676 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Pgc progastricsin (pepsinogen C) within coordinates
Tssr5149 transcription start site region 5149 1263 bp downstream
Tssr145023 transcription start site region 145023 1985 bp downstream
Tssr145024 transcription start site region 145024 1883 bp downstream
Tssr145025 transcription start site region 145025 1520 bp downstream
Tssr145026 transcription start site region 145026 1280 bp downstream
Tssr145027 transcription start site region 145027 339 bp downstream
Tssr145028 transcription start site region 145028 298 bp downstream
Tssr145029 transcription start site region 145029 281 bp downstream
Tssr145030 transcription start site region 145030 203 bp upstream
Tssr145031 transcription start site region 145031 219 bp upstream
Tssr145032 transcription start site region 145032 227 bp upstream
Tssr145033 transcription start site region 145033 308 bp upstream
Tssr145034 transcription start site region 145034 310 bp upstream
Tssr145035 transcription start site region 145035 1000 bp upstream
Tssr145036 transcription start site region 145036 1008 bp upstream
Tssr145037 transcription start site region 145037 1052 bp upstream
Tssr145038 transcription start site region 145038 1062 bp upstream
Tssr145039 transcription start site region 145039 1427 bp upstream
Tssr145040 transcription start site region 145040 1451 bp upstream
Tssr145041 transcription start site region 145041 1488 bp upstream
Tssr145042 transcription start site region 145042 1506 bp upstream
Tssr145043 transcription start site region 145043 1561 bp upstream
Tssr145044 transcription start site region 145044 1578 bp upstream
Tssr145045 transcription start site region 145045 1588 bp upstream
Tssr145046 transcription start site region 145046 1607 bp upstream
Tssr145047 transcription start site region 145047 1655 bp upstream
Tssr145048 transcription start site region 145048 1687 bp upstream
Tssr148469 transcription start site region 148469 1988 bp upstream
Tssr148470 transcription start site region 148470 313 bp upstream
Tssr148471 transcription start site region 148471 291 bp upstream
Tssr148472 transcription start site region 148472 277 bp upstream
Tssr148473 transcription start site region 148473 263 bp upstream
Tssr148474 transcription start site region 148474 245 bp upstream
Tssr148475 transcription start site region 148475 276 bp downstream
Tssr148476 transcription start site region 148476 304 bp downstream
Tssr148477 transcription start site region 148477 335 bp downstream
Tssr148478 transcription start site region 148478 1047 bp downstream
Tssr148479 transcription start site region 148479 1085 bp downstream
Tssr148480 transcription start site region 148480 1563 bp downstream
Tssr148481 transcription start site region 148481 1593 bp downstream
Tssr148482 transcription start site region 148482 1724 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory