rs257505733 SNP Detail

Summary

• ID
  rs257505733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137742869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATGCCAG TATGGGTGCC
  AAGAAAGAAA AATGGCAGTT GGGAGTTCGC TTTTTTTCTT GCCAGTTGCA GAATAGACCC
  TTTATGTGTG TGCAGATTCT CCTTCATAAT GATGAAGGGA TAATATGGGA CAGGTGGGAG
  AGGGCTGGAG ATGGGAAAGA GCTGGTCTGT AGCCAGCTGG GATTGGTTCT CAGGTATACG
  Y
  ACGGGGTAGT TGTGTGGACA TGGGTGTGTG TCCAAGCACT TGGGGAAGCA GAAGTGAGCA
  ACTTCATCTT CCCATCTACC TAAGTGTTTA TATGAGGGAC AAAGATGAGA AGGTAGCAAT
  GCCTGTTCTG GGCTGAGGAG TGGCTCAGCA GGTAAAAGTT CTTGCTACTC AAGCATGAGG
  ACCTGAGTTC AAATCTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366884352	MGP_WTSI_5_138185835	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	T	T	T	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257505733					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	T	T	T	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366884352	MGP_WTSI_5_138185835	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137742869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16849	CpG island 16849	1400 bp proximal
Gm57848	predicted gene, 57848	1405 bp upstream
Rr622970	regulatory region 622970	75 bp distal
Rr622971	regulatory region 622971	633 bp proximal
Rr622972	regulatory region 622972	1887 bp proximal
Tsc22d4	Tsc22 domain family, member 4	1405 bp upstream
Tssr49366	transcription start site region 49366	1144 bp upstream
Tssr49367	transcription start site region 49367	1346 bp upstream
Tssr49368	transcription start site region 49368	1360 bp upstream
Tssr49369	transcription start site region 49369	1506 bp upstream
Tssr49370	transcription start site region 49370	1576 bp upstream
Tssr49371	transcription start site region 49371	1631 bp upstream
Tssr49372	transcription start site region 49372	1748 bp upstream
Tssr49373	transcription start site region 49373	1940 bp upstream