rs257509730 SNP Detail

Summary

• ID
  rs257509730
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:160209714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTAGCTCT GTCTGCGCTA
  ATGTATGCGG TGGGGGAGGG CGGGGTTGGG GCTCCAAGAG TTCTGTTCAG ATCTAACTCT
  TAACCTCTAG GAAGGTTCCT CGGGCCAAGA GACGCTGTTC CTCTCTTAGC CGGTTCAGTG
  ATTGAGCTCA GAAGACAGAG CTCCAGTGGT CTCGCAGCTC CGTGCATTCG CCACCCCCCC
  M
  CACACACCCC CAAACGCTCC CAAAGAAGAT AAACAAACAA ACAGAGTTGG CCCAAAGGCT
  CTGAATACCT TTCACTTGCC AGTCGTGTGG AAACCTTACA ACTCCGAGGC TCAGAGCCGA
  GACCAACACC GGTCTGTGCA CTCAGTGGCT CTGGGATGCT GGGGAACCCG GCCCTGTTTT
  TGTCTGAACG TTTTGTAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss356332429	MGP_WTSI_2_160193530	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs257509730					SNP	C	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356332429	MGP_WTSI_2_160193530	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160209714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12607	CpG island 12607	within coordinates
Gm57434	predicted gene, 57434	within coordinates
Gm74788	predicted gene, 74788	within coordinates
Mafb	MAF bZIP transcription factor B	729 bp upstream
Tssr21382	transcription start site region 21382	1986 bp downstream
Tssr21383	transcription start site region 21383	1550 bp downstream
Tssr21384	transcription start site region 21384	1510 bp downstream
Tssr21385	transcription start site region 21385	437 bp downstream
Tssr27240	transcription start site region 27240	721 bp upstream
Tssr27241	transcription start site region 27241	146 bp downstream