rs257512190 SNP Detail

Summary

• ID
  rs257512190
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121420811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTGCTGT GGGTGCTGGG
  AGTTCAAGCC CACCCTCTGT GCGAGTAGCA AGTGTTCCCA ACCACTTCCA TCCCCCATGT
  TTGGCTTTTA TTTCATATAT TCAATTTAAT TTAAATCCCA GAGCTGTAAG AAACATCCGT
  TTATTGTCTA GTACTGTCTC TGACAATCAA AATAATATTG ACTATTTCCT CCAATTGCTT
  K
  AAAAGATTAA TCCTGATTTA CAAAAAAATA TTTTTTGACC CAGGGTCTCT TCACAAGCCC
  AAGTTGGACT CGAACCTGCA ATTTTCCTGC CTTTGCCTCT CACATGCTGG GAGACAAATG
  AAAGAACTTA GGGAAGCGCA GAAAACCATC ACCACTACAG GATCGTCCCA GAAGGCAGAA
  TCTCGCCCAC AGAGAAACTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513532	CHEV_10_121021962	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257512190					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121420811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	1341 bp proximal
Rr402304	regulatory region 402304	966 bp upstream
Rr402305	regulatory region 402305	1820 bp upstream
Tbk1	TANK-binding kinase 1	within coordinates
Tssr96043	transcription start site region 96043	1311 bp upstream
Tssr96044	transcription start site region 96044	1347 bp upstream
Tssr99623	transcription start site region 99623	967 bp downstream
Tssr99624	transcription start site region 99624	995 bp downstream
Tssr99625	transcription start site region 99625	1016 bp downstream
Tssr99626	transcription start site region 99626	1804 bp downstream
Tssr99627	transcription start site region 99627	1824 bp downstream
Tssr99628	transcription start site region 99628	1907 bp downstream
Tssr99629	transcription start site region 99629	1935 bp downstream
Tssr99630	transcription start site region 99630	1963 bp downstream