rs257514124 SNP Detail

Summary

• ID
  rs257514124
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121267589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCTTTT TTTGGTTTTG
  GTTTTGGTTT TTCAAGACAG GGTTTCTCTG AGTAGCCTGG CCATCCTGAA ATTCACTCTG
  TAGACCAACC AGGCTGGCCT GGAACTCAGA AATCCGCCTG CCTCTGCCTC CCAAGTGCTG
  GGATTAAAGG CATGCGCCAC CACACCCGGC TATCCCTCCT CCTTTCTTTT TTTTATTTTT
  K
  TTTTGTTTTG GTTTGGTTTG GTTTGGTTTT TTGAGACAGG GTTTCTCTGT GTATCCCTGG
  CTGTCCTGGA ACTCACTTTG TAGACCAGTC TGGCCTCGAA CTCAGAAATC CACCTGCCTC
  TGCCTCCCGA GTGCTGGGAT TAAAGGCGTG CGCCACCACA CCCAGCCCTC CTCCTTACTT
  GTTCATGTTT TTTATATGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss355466557	MGP_WTSI_2_121262844	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	T	T	T	T	T	G	G	G	G	G	G	G	T	T	G	T	T	T	G	T	G	T	G	T	T	T	G	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs257514124					SNP	T	T	T	G	T	T	T	T	T	G	G	G	G	G	G	G	T	T	G	T	T	T	G	T	G	T	G	T	T	T	G	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355466557	MGP_WTSI_2_121262844	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121267589 () rs orientation: forward

Symbol	Name	Function Class
Ell3	elongation factor RNA polymerase II-like 3	1919 bp downstream
Pdia3	protein disulfide isomerase associated 3	within coordinates
Rr563821	regulatory region 563821	1967 bp distal
Tssr19767	transcription start site region 19767	1186 bp downstream
Tssr19768	transcription start site region 19768	744 bp downstream
Tssr19769	transcription start site region 19769	499 bp upstream
Tssr19770	transcription start site region 19770	797 bp upstream