rs257530084 SNP Detail

Summary

• ID
  rs257530084
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152682081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCTCTGA AGGCTAGGTT
  GGGTAAGTCT CATGCACAGA TCTGAGAGTG TAGCTGGCAG CAGGAGCCAG CCAGTAGAAG
  CCTGCACAGA TGTAGAAACT GAGAAGCCAA GGAAATCACT TGGAAGTTTA AATGTCAGGC
  TAGGATGCTG CTGCTGCCGC TGCCGCTGCT GCTAAGGAGG AGGAGGAAGA GGAGGAAGAT
  C
  ACAACATTGC TTATAAAAAG CCTTGTTTGG CTACAAGTCT ACTTGATTTC CCTGAGAGTA
  ATCACTGTAC TGGTCAAGTT CTGTTCATTC ATTGGTCAAA GTCACAGATG TGGCTATTAC
  CTGTGGGTCA TTTCTCAGCA TGCATGCTGG ATAAGACCTC TAGCTCTGAA CTACTCAATT
  TTTTATATTA AGACAGAATC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351956984	MGP_WTSI_1_154653460	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257530084					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351956984	MGP_WTSI_1_154653460	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152682081 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	Intron
Rr420547	regulatory region 420547	1193 bp proximal
Tssr9423	transcription start site region 9423	1442 bp upstream
Tssr9424	transcription start site region 9424	1489 bp upstream
Tssr9425	transcription start site region 9425	1497 bp upstream
Tssr9426	transcription start site region 9426	1547 bp upstream
Tssr9427	transcription start site region 9427	1575 bp upstream
Tssr9428	transcription start site region 9428	1588 bp upstream
Tssr9429	transcription start site region 9429	1618 bp upstream
Tssr14234	transcription start site region 14234	1980 bp downstream