rs257533894 SNP Detail

Summary

• ID
  rs257533894
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117114789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTGTATG GCTGCAGTGA
  TGTCATCCTG CAGCAGAGCT GAAAGACAAG GGTGAGGAGT GACAAGGACA GTTATAGAAC
  CACTTCAGGT CGGATCCAGC CAGCCTTCTC TGTAACAGGG AGCACTGAAT ATAGGGAATT
  ACTTCCCAAG TATCTGTGCA TCTGTTATTA TTGGAGACAG CCTCCTGCTT CTCTCACAAA
  R
  CCATGCCTGC AGTAACAAAT ACTGACCTGA ATTCTCCTCT TAAAGAGAGA ATAACATTAT
  GGTAGCAATA TTCTGTGCTT GAAAACAACA TGCTGTAGTC TTTGGTCTTA AAGCAGCTGG
  GCTCCTTCCA TTGTGACCCC ACTTCTCATT TACAGAGTCC CTGGTGGGTC TGGGATATGC
  TTCAGTGGTC GTGGGGTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323495160	CHEV_10_116715940	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257533894					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117114789 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	52 bp downstream
Lyz2	lysozyme 2	within coordinates
Tssr95904	transcription start site region 95904	1544 bp downstream
Tssr95905	transcription start site region 95905	1476 bp downstream
Tssr95906	transcription start site region 95906	1422 bp downstream
Tssr95907	transcription start site region 95907	1389 bp downstream
Tssr95908	transcription start site region 95908	1208 bp downstream
Tssr95909	transcription start site region 95909	1118 bp downstream
Tssr95910	transcription start site region 95910	972 bp downstream
Tssr95911	transcription start site region 95911	864 bp downstream
Tssr95912	transcription start site region 95912	793 bp downstream
Tssr95913	transcription start site region 95913	716 bp downstream
Tssr95914	transcription start site region 95914	1750 bp upstream
Tssr95915	transcription start site region 95915	1828 bp upstream
Tssr99410	transcription start site region 99410	1432 bp upstream
Tssr99411	transcription start site region 99411	1354 bp upstream
Tssr99412	transcription start site region 99412	1248 bp upstream
Tssr99413	transcription start site region 99413	1195 bp upstream
Tssr99414	transcription start site region 99414	1081 bp upstream
Tssr99415	transcription start site region 99415	1021 bp upstream
Tssr99416	transcription start site region 99416	954 bp upstream
Tssr99417	transcription start site region 99417	879 bp upstream
Tssr99418	transcription start site region 99418	860 bp upstream
Tssr99419	transcription start site region 99419	822 bp upstream
Tssr99420	transcription start site region 99420	764 bp upstream
Tssr99421	transcription start site region 99421	688 bp upstream
Tssr99422	transcription start site region 99422	21 bp downstream
Tssr99423	transcription start site region 99423	1783 bp downstream
Tssr99424	transcription start site region 99424	1851 bp downstream
Tssr99425	transcription start site region 99425	1896 bp downstream