rs257540550 SNP Detail

Summary

• ID
  rs257540550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:113326926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATACATACA CCACCAGACG GTCGTGCCCA
  TTCACAGGGG CAGCTTCTTA CAATATCTAT AGGTATCTAT GCCATACAAC TGTGTGGGGT
  GTGGAGtttt tgtttgtttg tttttgcttt gttttttttt ttttttAGCT CATTGTCCTA
  Y
  CTGCTGTATA GATAATAAAC AAAATTCAAA AAACATACAG TTTTCAAATT CAACAGAGGA
  AGTTCAAGGG TTGAATTGCT AACATTTGAC CTGTCCTGAC GCATAGAGCA GCCAGTTTTA
  GATGACCTAA CTGGATATGT TCACCTTAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320461227	CHEV_2_113336738	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257540550					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113326926 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fmn1	formin 1			Intron
				Noncoding-Transcript-Variant
Rr288	regulatory region 288			1027 bp proximal
Rr562766	regulatory region 562766			1530 bp distal
Rr562767	regulatory region 562767			1675 bp distal
Rr562768	regulatory region 562768			1219 bp proximal