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rs257541992 SNP Detail
Summary
  • ID
    rs257541992
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr19:44384333 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GATTTTCTAC TTCAACAAAA
CAGCTCAGAG CGCGTGTTCA ATTAACATAG GGGGGAAAAA AGGCTCTGAT TCTACAAGTG
AACTGAGTGT TTGGCACCTT ACACAGCCAG TTCTAAAAAC CAGGCCTCTG GATTGGGCTA
TAGGGACAAG AGATGGTTGA TGGTTCTAAA ATACTGATGT GATGTTTTCT TCTAGACTTT
Y
CTATAGCACT GTTGGCCCTG GACTGTGTGA CAGAGTGTTA GGTATCAGGT CTCACCTTAG
ATATCAGGTC TCAGTCACTT TTCATCACAC ACTGGCTTCA GGAAGCAGAC CCTCTTCCTG
AAGTGAGGTC CATTAGCACT TGCCCATGTC TCTGGTGTTT TAACAGATAA AATGGGGAAC
TTCTTCCTTT CAGCAGCACT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552085 MGP_WTSI_19_44470384 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257541992 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552085 MGP_WTSI_19_44470384 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44384333 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 1261 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 1111 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 1219 bp proximal
Rr548236 regulatory region 548236 1426 bp distal
Rr548237 regulatory region 548237 476 bp distal
Rr548238 regulatory region 548238 975 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 465 bp downstream
Tssr156606 transcription start site region 156606 514 bp upstream
Tssr156607 transcription start site region 156607 838 bp upstream
Tssr156608 transcription start site region 156608 1247 bp upstream
Tssr156609 transcription start site region 156609 1457 bp upstream
Tssr159446 transcription start site region 159446 1301 bp upstream
Tssr159447 transcription start site region 159447 1126 bp upstream
Tssr159448 transcription start site region 159448 1100 bp upstream
Tssr159449 transcription start site region 159449 1037 bp upstream
Tssr159450 transcription start site region 159450 1023 bp upstream
Tssr159451 transcription start site region 159451 943 bp upstream
Tssr159452 transcription start site region 159452 649 bp upstream
Tssr159453 transcription start site region 159453 580 bp upstream
Tssr159454 transcription start site region 159454 561 bp upstream
Tssr159455 transcription start site region 159455 255 bp upstream
Tssr159456 transcription start site region 159456 136 bp upstream
Tssr159457 transcription start site region 159457 107 bp upstream
Tssr159458 transcription start site region 159458 73 bp upstream
Tssr159459 transcription start site region 159459 8 bp downstream
Tssr159460 transcription start site region 159460 45 bp downstream
Tssr159461 transcription start site region 159461 104 bp downstream
Tssr159462 transcription start site region 159462 132 bp downstream
Tssr159463 transcription start site region 159463 178 bp downstream
Tssr159464 transcription start site region 159464 201 bp downstream
Tssr159465 transcription start site region 159465 225 bp downstream
Tssr159466 transcription start site region 159466 246 bp downstream
Tssr159467 transcription start site region 159467 299 bp downstream
Tssr159468 transcription start site region 159468 547 bp downstream
Tssr159469 transcription start site region 159469 617 bp downstream
Tssr159470 transcription start site region 159470 634 bp downstream
Tssr159471 transcription start site region 159471 651 bp downstream
Tssr159472 transcription start site region 159472 687 bp downstream
Tssr159473 transcription start site region 159473 706 bp downstream
Tssr159474 transcription start site region 159474 731 bp downstream
Tssr159475 transcription start site region 159475 776 bp downstream
Tssr159476 transcription start site region 159476 794 bp downstream
Tssr159477 transcription start site region 159477 814 bp downstream
Tssr159478 transcription start site region 159478 824 bp downstream
Tssr159479 transcription start site region 159479 848 bp downstream
Tssr159480 transcription start site region 159480 876 bp downstream
Tssr159481 transcription start site region 159481 925 bp downstream
Tssr159482 transcription start site region 159482 1025 bp downstream
Tssr159483 transcription start site region 159483 1116 bp downstream
Tssr159484 transcription start site region 159484 1150 bp downstream
Tssr159485 transcription start site region 159485 1276 bp downstream
Tssr159486 transcription start site region 159486 1283 bp downstream
Tssr159487 transcription start site region 159487 1364 bp downstream
Tssr159488 transcription start site region 159488 1381 bp downstream
Tssr159489 transcription start site region 159489 1435 bp downstream
Tssr159490 transcription start site region 159490 1537 bp downstream
Tssr159491 transcription start site region 159491 1572 bp downstream
Tssr159492 transcription start site region 159492 1623 bp downstream
Tssr159493 transcription start site region 159493 1649 bp downstream
Tssr159494 transcription start site region 159494 1669 bp downstream
Tssr159495 transcription start site region 159495 1787 bp downstream
Tssr159496 transcription start site region 159496 1857 bp downstream
Tssr159497 transcription start site region 159497 1870 bp downstream
Tssr159498 transcription start site region 159498 1882 bp downstream
Tssr159499 transcription start site region 159499 1912 bp downstream
Tssr159500 transcription start site region 159500 1943 bp downstream
Tssr159501 transcription start site region 159501 1958 bp downstream
Tssr159502 transcription start site region 159502 1994 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory