rs257542827 SNP Detail

Summary

• ID
  rs257542827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:121216780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCGTGCA TGACATGGTC
  TGCTCTTTTC TGCAGATGAT TTGGGAATAG TTTTGCTAGG AAACGTAGGA AACGTGCACG
  TGGCTGGGTG TTGGGTTAAC ATTGCCTCCC CCCGTCCCCA CTTGTGTGTT GTGTGGATCC
  TGTGGCTCTT GCCAGATCTC CACCAACCTG GAGTCCAGAG AAGGAGATGT GGGCCAAGAA
  Y
  CTGCCTGGGC AGGACTCAGC TACAGGGAGC TGGCCCTAGT CGTCCTGACC TAGGGCACAC
  GTTGTAACTG AGTTAATGTA GCAGAGATGA AAGGTCGCAA GGAAAAGCGG GTGGAGGAGG
  CAGTTCCGAC TGCAGGACGG CTGTAGGTGG CTCTGGGCGT TCCTTTGCGG ATGCTTCTAT
  GTCCAGCCCT ACCTGGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376271979	MGP_WTSI_8_123013941	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257542827					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376271979	MGP_WTSI_8_123013941	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121216780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21144	CpG island 21144	1640 bp distal
Cpgi21145	CpG island 21145	within coordinates
Gm51556	predicted gene, 51556	373 bp upstream
Gse1	genetic suppressor element 1, coiled-coil protein	Intron
Rr671535	regulatory region 671535	1584 bp distal
Rr671536	regulatory region 671536	1971 bp distal
Rr671537	regulatory region 671537	1614 bp distal
Rr671538	regulatory region 671538	640 bp distal
Rr671539	regulatory region 671539	1491 bp proximal
Tssr79756	transcription start site region 79756	1841 bp downstream
Tssr79757	transcription start site region 79757	1816 bp downstream
Tssr79758	transcription start site region 79758	1800 bp downstream
Tssr79759	transcription start site region 79759	1551 bp downstream
Tssr79760	transcription start site region 79760	1531 bp downstream
Tssr79761	transcription start site region 79761	1472 bp downstream
Tssr79762	transcription start site region 79762	1293 bp downstream
Tssr79763	transcription start site region 79763	1238 bp downstream
Tssr79764	transcription start site region 79764	1201 bp downstream
Tssr79765	transcription start site region 79765	974 bp downstream
Tssr83193	transcription start site region 83193	697 bp upstream
Tssr83194	transcription start site region 83194	588 bp upstream