rs257550298 SNP Detail

Summary

• ID
  rs257550298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4747462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCGCCCCCC CTCCTAGGAT CTCTCTATAT
  AAGGCAAGCA GTCCGGACTC CCGATACACG CGTTTCCAAC TTGAGTTGGT GTGTGTCGAA
  GAATCCTGAC CAACTACGAC CTGGGGAGAG CAGCCAACCG AGAAGGTCCA CCGAGCCTCG
  Y
  CTAGGTCTGC TGCGCGGGCT GCGGTCCGGA GCCTTCTCCG GACCGCGGTC ACCCAGTGGA
  CCGGGCCGTC GCGGGACCCC TCATCCTTCG TGGCATCGCA GAGGAATCCT CGTGTGGTGA
  GTATGGTTAG GATTTTTTTT TTTTTTTTAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321727773	CHEV_6_4697462	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257550298					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4747462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17126	CpG island 17126	within coordinates
Peg10	paternally expressed 10	within coordinates
Rr146220	regulatory region 146220	within coordinates
Sgce	sarcoglycan, epsilon	282 bp upstream
Tssr1771	transcription start site region 1771	108 bp downstream
Tssr1772	transcription start site region 1772	21 bp downstream
Tssr1773	transcription start site region 1773	10 bp downstream
Tssr54763	transcription start site region 54763	90 bp downstream
Tssr54764	transcription start site region 54764	148 bp upstream
Tssr59724	transcription start site region 59724	1067 bp upstream
Tssr59725	transcription start site region 59725	432 bp upstream
Tssr59726	transcription start site region 59726	406 bp upstream
Tssr59727	transcription start site region 59727	330 bp upstream
Tssr59728	transcription start site region 59728	278 bp upstream