rs257553245 SNP Detail

Summary

• ID
  rs257553245
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84767381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTGGTG GAAGTTAGTG
  ACTGTCGGTA GAGGCAGCGG GAGGGTGGGT GGGGGTGGGG GATGGGAATT GTGGTCCGAG
  ACAAGGCTCT TGTTGGGATA TTTTTCATAG TGACCAAGTA GCCGTGAGAC CTTGGGGCAA
  GTTCAGAAAA CCTTCGGAAG TTTTTGTTTT TGCCGCACTG AAGAGTTCCC GCTGTAGACC
  R
  AACATTTATT TGTCAGGCCT TCGAATGGCT CAGGGTGGCT GCTCCTCTGG TGGACTGTAT
  TCAGGCTTTC AAGTCGGGGG TTCTGGGGGG GTGGGAGGGG AGCTCCTACC TCTGCTTGTG
  ATGTCCCCAA ACATTAGGCA GGATGTGTGT GTGTGTGTGT GTTTTTTTTC CTATGTGGCA
  TGTGTTGCCA TTGAGACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354689945	MGP_WTSI_2_84777194	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257553245					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354689945	MGP_WTSI_2_84777194	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84767381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11876	CpG island 11876	172 bp distal
Rr57133	regulatory region 57133	1380 bp distal
Rr57134	regulatory region 57134	within coordinates
Rr397102	regulatory region 397102	1578 bp upstream
Rr397103	regulatory region 397103	1891 bp upstream
Slc43a3	solute carrier family 43, member 3	within coordinates
Tssr554	transcription start site region 554	213 bp upstream
Tssr18709	transcription start site region 18709	431 bp downstream
Tssr18710	transcription start site region 18710	325 bp downstream
Tssr18711	transcription start site region 18711	332 bp upstream
Tssr18712	transcription start site region 18712	577 bp upstream
Tssr18713	transcription start site region 18713	615 bp upstream
Tssr25061	transcription start site region 25061	1379 bp downstream