rs257568449 SNP Detail

Summary

• ID
  rs257568449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14680001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATCCCATG TTCTCTTTGC
  CAACATTGAC TTAGTTCTTG CTGACCTGGG CTGTTTAGTG CCACCCCCCC ACTCCCACCC
  CCAAAAATAG CATATGTAAG GCTGTACTTC TCAATAAACT TGCTTGGCAT AAGTCATCAA
  CTTATGCAAG ATCGCCTGTG GTCCCAGCTA TGCTTTTGCC TCCCTAGTTT CTCATCCCTG
  Y
  TCCTCCCACT CAACACTTCT GCACTAGGGA ACCTGTTCCT ATTGGTTTGA GACATTTCAG
  CCTTCTGTCT CATGACGTCC CCTGAGCCTT CTGGGAAGGG GTGTGATGCA GATGTCCCGT
  TTGTGGCTGA GCCGTTATTC TCTGCATTCT GATGAGTTAT GAGTTTCTGT GTTAACCATT
  ATACACTGCA GAAGTTCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390182195	MGP_WTSI_14_8622286	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257568449					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390182195	MGP_WTSI_14_8622286	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14680001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6151	CpG island 6151	1575 bp distal
Gm10044	predicted gene 10044	within coordinates
Gm26661	predicted gene, 26661	1683 bp upstream
Gm62508	predicted gene, 62508	within coordinates
Gm62514	predicted gene, 62514	1624 bp upstream
Rr487950	regulatory region 487950	1869 bp distal
Rr487951	regulatory region 487951	1635 bp distal
Rr487952	regulatory region 487952	1833 bp distal
Rr487953	regulatory region 487953	1328 bp distal
Tssr124205	transcription start site region 124205	1643 bp upstream
Tssr124206	transcription start site region 124206	1656 bp upstream
Tssr124207	transcription start site region 124207	1667 bp upstream
Tssr124208	transcription start site region 124208	1679 bp upstream
Tssr124209	transcription start site region 124209	1716 bp upstream
Tssr124210	transcription start site region 124210	1742 bp upstream
Tssr127381	transcription start site region 127381	1996 bp downstream